Alignment uncertainty, regressive alignment and large scale deployment 

    Floden, Evan (Date of defense: 2018-11-30)

    A multiple sequence alignment (MSA) provides a description of the relationship between biological sequences where columns represent a shared ancestry through an implied set of evolutionary events. The majority of research ...

    BeFree : a text mining system for the extraction of biomedical information from literature 

    Bravo Serrano, Àlex (Date of defense: 2016-11-28)

    Current biomedical research needs to leverage the large amount of information reported in scientific publications. Automated text processing, commonly known as text mining, has become an indispensable tool to identify, ...

    Big behavioral data analysis : computational methods for the study of continuous recordings behavior 

    Espinosa-Carrasco, José (Date of defense: 2016-11-08)

    New high-throughput behavioral systems enable the recording of continuous behavioral sequences with an unprecedented richness of signals and a deep temporal resolution. Automated systems offer neuroscience the opportunity ...

    Biochemoinformatics: integrative computational tools at the interface between chemistry and biology 

    García Serna, Ricard (Date of defense: 2010-09-27)

    The work on this thesis has focused on the development of integrated databases and visualization tools for three related areas of biomedical sciences involved in the drug discovery process. An annotated chemical library ...

    Bioinformatic analysis of epigenetic regulatory mechanisms in development and disease 

    González Ramírez, Mar (Date of defense: 2021-03-19)

    Appropriate regulation of gene expression is necessary for correct development and homeostasis of organisms. Epigenetic mechanisms represent an additional layer of information, besides the genetic sequence, crucial for the ...

    Biological foundations of consonance perception : exploring phylogenetic roots and neural mechanisms 

    Crespo Bojorque, Paola (Date of defense: 2016-12-02)

    La consonancia es una de las características más salientes de la música. A pesar de su papel fundamental en la música occidental, sus orígenes siguen siendo controversiales. Por lo tanto, la comprensión de los mecanismos ...

    Development of synthetic biology devices for iron metabolism research 

    Constante Pereira, Marco (Date of defense: 2011-12-02)

    Synthetic biology is a fairly recent field that aims to engineer novel functions in biological systems. In a broad sense synthetic biology encompasses the development of tools that makes the engineering of biology easier. ...

    Distributed computation in multicellular synthetic networks 

    Urrios Garcia, Arturo (Date of defense: 2017-11-27)

    Biological systems gather information from the environment and perform computations at multiple levels. Advancements in molecular biology and techniques for cell manipulation, genome engineering and DNA synthesis among ...

    Dynamics and biological information processing : from gene circuits to cellular populations 

    Gabaldà Sagarra, Marçal (Date of defense: 2017-01-23)

    Living beings strive to survive and reproduce. To do so they need to monitor and adapt to a dynamic environment, taking advantage of the opportunities and dodging the threats that they may encounter. This thesis is devoted ...

    Engineering principles for synthetic biology : from concept to practice 

    Carbonell Ballestero, Max (Date of defense: 2016-06-13)

    Synthetic Biology is a relatively new and multi-faceted interdisciplinary emergent field of research that combines biology with technology in novel and exciting ways. One of its main branches aims to see living systems ...

    Estudio funcional y molecular del canal Maxi-Cl activado por antiestrógenos 

    Bahamonde Santos, María Isabel (Date of defense: 2004-02-27)

    Las membranas celulares contienen un canal de Cl- (Maxi-Cl-) que es modulado por estrógenos y antiestrógenos. El trabajo experimental de mi tesis doctoral ha consistido en el estudio de la modulación de este canal y su ...

    Experience-dependent information processing in biological systems 

    Vidal Saez, Maria Sol (Date of defense: 2024-04-15)

    Organisms need to integrate its previous experience with its current internal state in order to deliver a suitable response to dynamic changes in their environment. This thesis is devoted to analyze, using a mathematical ...

    Exploring the molecular bases underlying complex diseases and drug action through a systems biology approach 

    Juan Blanco, Teresa (Date of defense: 2018-07-20)

    Las enfermedades y otros procesos biológicos son complejos y están producidos por la interacción de múltiples factores genéticos y ambientales. En las últimas décadas, los métodos tradicionales reduccionistas han dado paso ...

    Integrative approaches to investigate the molecular basis of diseases and adverse drug reactions: from multivariate statistical analysis to systems biology 

    Bauer-Mehren, Anna (Date of defense: 2010-11-08)

    Despite some great success, many human diseases cannot be effectively treated, prevented or cured, yet. Moreover, prescribed drugs are often not very efficient and cause undesired side effects. Hence, there is a need to ...

    Multiobjetive optimization in models of synthetic and natural living systems 

    Seoane, Luís F. (Date of defense: 2016-05-13)

    This thesis tackles a series of phenomena across diverse fields from the point of view of optimization. The problems studied often bring together diverse conflicting constraints that cannot be fully satisfied. Out of ...

    Multisensory integration and decision-making in Drosophila larvae 

    Braun, Andreas (Date of defense: 2016-02-05)

    Numerous studies have shown that a wide range of behaviors from sensory processing to motor control involve near-optimal probabilistic inference. Most of these studies have focused on vertebrates, suggesting that the ability ...

    New approaches in omics data modelling 

    Nonell Mazelon, Lara (Date of defense: 2019-11-19)

    The breakthrough in the technological field has allowed the extraction of large amounts of the so-called omics data. The analysis and Integration of this type of data by means of advanced statistical and bioinformatics ...

    Principles of distributed biological computation in non-growing cells : A rational architecture for chemical wires 

    Toscano Ochoa, Carlos (Date of defense: 2021-04-19)

    One of the branches of synthetic biology pursues the creation of a biological computer. Many have successfully implemented simple logic circuits rewiring cellular components. However, these circuits may aggressively compete ...

    "The Clever machine"- a computational tool for dataset exploration and prediction 

    Klus, Petr (Date of defense: 2016-07-12)

    The purpose of my doctoral studies was to develop an algorithm for large-scale analysis of protein sets. This thesis outlines the methodology and technical work performed as well as relevant biological cases involved in ...